<P> While Red John gloats over his victories, Jane reveals that he knows how McAllister survived the explosion back at his home: he brought two bombs . One was a concussion bomb that knocked out everyone in the room, at which point McAllister dragged Jane, Bertram, and Smith away from the more deadly bomb . McAllister then brought in a dead body from the trunk of his car, which had its DNA records swapped with those of McAllister's courtesy of Brett Partridge, a member of the Blake Association whose job gave him access to the DNA primary data base and was later murdered by McAllister for knowing too much . This body was placed next to Stiles and Haffner, both of whom perished in the explosion, leaving only Jane, Smith, and Bertram alive, while McAllister escaped before the authorities arrived . McAllister knew that either Smith or Bertram would be accused of being Red John as they would be the only remaining suspects with ties to the Blake Association . McAllister had then ordered for Smith to be killed before CBI could arrest him and had Bertram (anonymously through the Blake Association) lure Jane to a final meeting before Bertram was to escape the country, while also secretly ordering Oscar to aid the former CBI director and ensure his safety until Jane arrived, at which point he was to kill Bertram . </P> <P> Before McAllister can kill Jane, Jane hands him a handful of bread crumbs and releases a pigeon from his jacket, startling McAllister, who had displayed a phobia of the creatures in a previous episode . This revealed that Jane knew McAllister was Red John before meeting Bertram and deduced his phobia, which Sophia Miller previously speculated on (also implying why he was unable to kill Lisbon previously as the house they were in during the season premiere contained pigeons). Jane then snatches a gun he taped underneath one of the pews the previous day and shoots McAllister in the torso and Oscar dead when he enters to stop Jane; McAllister begs Jane not to kill him . As Jane revels in finally knowing who his nemesis is and having him at his mercy, a startled woman enters the chapel and asks Jane to stop . As Jane tries to calm the woman and get her to leave, she reveals herself to be another of Red John's agents and attempts to slit Jane's throat with a knife . Jane knocks out the woman with a candle stand and, realizing that McAllister escaped during the commotion, leaves the chapel to chase the killer . </P> <P> After being pursued through the cemetery, a neighborhood, and a playground, McAllister loses his stamina near a small pond and dials 911 . Jane kicks his nemesis, knocking the phone away from him, and grasps the man's throat . As McAllister claims that he knew who would be on Jane's final list of suspects because he is a real psychic, Jane asks him two final questions to determine his honesty by looking at his eyes . Asking McAllister to blink once for no and two for yes, Jane asks if he is sorry for murdering his wife and daughter and if he is afraid to die; McAllister blinks twice to both questions . Satisfied with his answers, Jane then strangles McAllister to death . </P>

What happened to red john in the mentalist